This is currently a limitation of Chutzpah where it doesn't run code coverage on the html file. There are also known issues with running AMD using the .js file.
I plan to work on making AMD work better for the .js files and for an overall more robust solution I plan to add the ability to define HTML templates. The way this will work is you will not use your own HTML file but create an HTML template which Chutzpah will instantiate and use. This should give you the flexibility to configure your AMD code fully and till get the benefits of running on a .js file and get code coverage.
I plan to add this feature for the next major release. Does that make sense?
I plan to work on making AMD work better for the .js files and for an overall more robust solution I plan to add the ability to define HTML templates. The way this will work is you will not use your own HTML file but create an HTML template which Chutzpah will instantiate and use. This should give you the flexibility to configure your AMD code fully and till get the benefits of running on a .js file and get code coverage.
I plan to add this feature for the next major release. Does that make sense?